Conference Program with Presenters' Slides

Slides from the CAGI conference : registered users only, limited by CAGI Data use agreement

17 July 2013

9:00am: Registration and breakfast

10:00am: Welcome and Introduction to CAGI
                Steven E. Brenner, University of California, Berkeley
                John Moult, University of Maryland

10:20am – 11:10am: Splicing session
Session chair: Steve Mount, University of Maryland

10:20am: Introduction from the session chair
                Steve Mount, University of Maryland

10:25am: Data provider talk & Assessment
                Jeremy Sanford, University of California, Santa Cruz

10:45am: Predictor talk
                Adam Frankish, Wellcome Trust Sanger Institute

10:55am: Predictor talk
                Sean Mooney, The Buck Institute

11:05am: Overall prediction comments and conclusions

11:10am: Coffee break

11:40am – 1:00pm: p16 session
Session chair: Silvio Tosatto, University of Padua

11:40am: Data provider talk
                Maria Chiara Scaini, Immunology and Molecular Oncology Unit, IOV

11:55am: Assessment
                Silvio Tosatto, University of Padua

12:25pm: Predictor talk
                Panagiotis Katsonis, Baylor College of Medicine

12:35pm: Predictor talk
                Emidio Capriotti, University of Alabama, Birmingham

12:45pm: Overall prediction comments and conclusions

1:00pm: Lunch

2:00pm – 3.00 pm: MRN session
Session chair: Rachel Karchin, Johns Hopkins University

2:00pm: Introduction from the session chair
                Rachel Karchin, Johns Hopkins University

2:05pm: Data provider and Assessessment
                Sean Tavtigian, University of Utah

2:30pm: Predictor talk
                Ronald Dunbrack, Fox Chase Cancer Center

2:40pm: Overall prediction comments and conclusions

3:00pm – 4:30pm: FCH & HA session
Session Chair: Tim Hubbard, Wellcome Trust Sanger Institute

3:00pm: Introduction from the session chair
                Tim Hubbard, Wellcome Trust Sanger Institute

3:05pm: Data provider talk
                Angel Mak, University of California, San Francisco

3:15pm: Assessor talk
                Shamil Sunyaev, Harvard University

3:40pm: Predictor talk
                Lipika Ray, University of Maryland

3:50pm: Predictor talk
                Emanuela Leonardi, University of Padua

4:00pm: Predictor talk
                Yanay Ofran, Bar-Ilan University

4:10pm: Predictor talk
                Nathaniel Pearson, Ingenuity Systems

4:20pm: Overall prediction comments and conclusions

4:30pm – 5:30pm: BRCA session
Session Chair: Roland Dunbrack, Fox Chase Cancer Center

4:30pm: Data provider talk (slides included in BRCA assessment slides)
                Robert Nussbaum, University of California, San Franc

4:50pm: Assessor talk
                 Roland Dunbrack, Fox Chase Cancer Center

5:10pm: Overall prediction comments and conclusions

5:30pm: Coffee break

6:00pm: Outlook and prospects for informatics in cancer genomics
              Discussion chair: Julian Gough, University of Bristol

6:30pm: Reception

8:00pm: Group dinner at Alter Krug
              Königin-Luise-Straße 52
              14195 Berlin, Germany

18 July 2013

9:00am: Breakfast

10:00am – 11:20am: Crohn's Disease session
Session chair: Stephen Yee,University of California, Berkeley

10:00am: Introduction from the session chair
                Stephen Yee,University of California, Berkeley

10:05am: Assessment
                Alexander Morgan, Stanford University

10:35am: Predictor talk
                Manuel Giollo, University of Padua

10:45am: Predictor talk
                Predrag Radivojac, University of Indiana, Bloomington

10:55am: Predictor talk
                Pietro Di Lena, University of Bologna

11:05am: Overall prediction comments and conclusions

11:20am: Coffee break

11:55am – 12:45pm: riskSNPs session
Session chair: John Moult, University of Maryland

11:55am: Data provider talk & Assessment
                John Moult, University of Maryland

12:15pm: Predictor talk (slides included in riskSNPs assessment slides)
                Christopher Yates, Imperial College London

12:20pm: Predictor talk
                Steve Mount, University of Maryland

12:30pm: Overall prediction comments and conclusions

12:45pm: Lunch

1:45pm: Keynote talk: The future of genomic medicine in the UK
                Tim Hubbard, Wellcome Trust Sanger Institute

2:20pm: Structure vs. evolution for variant interpretation
                Discussion chair: Yana Bromberg, Rutgers University

2:40pm: Poster session and refreshments

4:10pm – 5:30pm: PGP session
Session chair: Sean Mooney, The Buck Institute

4:10pm: Data provider talk
                Madeleine Price Ball, Harvard University & The Personal Genome Project

4:25pm: Assessment
                Sean Mooney, The Buck Institute

4:50pm: Predictor talk
                Rachel Karchin, Johns Hopkins University

5:00pm: Predictor talk
                Mary Wahl, Harvard University

5:10pm: Overall prediction comments and conclusions

5:30pm: What did we learn?
                Discussion chairs: Steven Brenner and John Moult

6:00pm: The future of CAGI and publication plans
                Discussion chairs: Steven Brenner and John Moult